Return to home page
Searching: Muskingum library catalog
In response to the COVID-19 outbreak, statewide lending via OhioLINK and SearchOhio has been suspended. OPAL member libraries have closed or are operating at reduced service levels. Please contact your library with specific lending requests or if you need assistance.
  Previous Record Previous Item Next Item Next Record
  Reviews, Summaries, etc...
EBOOK
Author Tisdall, James D.
Title Beginning Perl for bioinformatics / James D. Tisdall.
Imprint Beijing ; Sebastopol, CA : O'Reilly, 2001.
Edition First edition.

LOCATION CALL # STATUS MESSAGE
 OHIOLINK SAFARI EBOOKS    ONLINE  
View online
LOCATION CALL # STATUS MESSAGE
 OHIOLINK SAFARI EBOOKS    ONLINE  
View online
Author Tisdall, James D.
Subject Perl (Computer program language)
Bioinformatics.
Description 1 online resource (xiii, 368 pages) : illustrations
Edition First edition.
Bibliography Note Includes bibliographical references (pages 309-314) and index.
Note "An introduction to Perl for biologists"--Cover.
Print version record.
Contents 1. Biology and Computer Science 1 -- Organization of DNA 2 -- Organization of Proteins 3 -- In Silico 4 -- Limits to Computation 5 -- 2. Getting Started with Perl 6 -- A Low and Long Learning Curve 6 -- Perl's Benefits 8 -- Installing Perl on Your Computer 10 -- How to Run Perl Programs 13 -- Text Editors 15 -- Finding Help 16 -- 3. Art of Programming 18 -- Individual Approaches to Programming 18 -- Edit--Run--Revise (and Save) 19 -- An Environment of Programs 21 -- Programming Strategies 22 -- Programming Process 23 -- 4. Sequences and Strings 29 -- Representing Sequence Data 29 -- A Program to Store a DNA Sequence 32 -- Concatenating DNA Fragments 36 -- Transcription: DNA to RNA 40 -- Using the Perl Documentation 42 -- Calculating the Reverse Complement in Perl 43 -- Proteins, Files, and Arrays 46 -- Reading Proteins in Files 47 -- Arrays 50 -- Scalar and List Context 54 -- 5. Motifs and Loops 56 -- Flow Control 56 -- Code Layout 62 -- Finding Motifs 63 -- Counting Nucleotides 70 -- Exploding Strings into Arrays 71 -- Operating on Strings 77 -- Writing to Files 81 -- 6. Subroutines and Bugs 87 -- Scoping and Subroutines 90 -- Command-Line Arguments and Arrays 96 -- Passing Data to Subroutines 98 -- Modules and Libraries of Subroutines 102 -- Fixing Bugs in Your Code 104 -- 7. Mutations and Randomization 118 -- Random Number Generators 119 -- A Program Using Randomization 120 -- A Program to Simulate DNA Mutation 126 -- Generating Random DNA 136 -- Analyzing DNA 141 -- 8. Genetic Code 149 -- Hashes 149 -- Data Structures and Algorithms for Biology 150 -- Genetic Code 155 -- Translating DNA into Proteins 163 -- Reading DNA from Files in FASTA Format 166 -- Reading Frames 175 -- 9. Restriction Maps and Regular Expressions 182 -- Regular Expressions 182 -- Restriction Maps and Restriction Enzymes 184 -- Perl Operations 197 -- 10. GenBank 199 -- GenBank Files 200 -- GenBank Libraries 203 -- Separating Sequence and Annotation 205 -- Parsing Annotations 212 -- Indexing GenBank with DBM 232 -- 11. Protein Data Bank 238 -- Files and Folders 240 -- PDB Files 248 -- Parsing PDB Files 257 -- Controlling Other Programs 267 -- 12. BLAST 274 -- Obtaining BLAST 275 -- String Matching and Homology 276 -- BLAST Output Files 277 -- Parsing BLAST Output 280 -- Presenting Data 290 -- Bioperl 294 -- Art of Program Design 302 -- Web Programming 302 -- Algorithms and Sequence Alignment 303 -- Object-Oriented Programming 303 -- Perl Modules 303 -- Complex Data Structures 304 -- Relational Databases 304 -- Microarrays and XML 305 -- Graphics Programming 305 -- Modeling Networks 305 -- DNA Computers 306.
Summary This book shows biologists with little or no programming experience how to use Perl, the ideal language for biological data analysis. Each chapter focuses on solving a particular problem or class of problems, so you'll finish the book with the skills to tackle more advanced bioinformatics programming.
Access Use copy Restrictions unspecified star
Reproduction Electronic reproduction. [S.l.] : HathiTrust Digital Library, 2010.
System Details Master and use copy. Digital master created according to Benchmark for Faithful Digital Reproductions of Monographs and Serials, Version 1. Digital Library Federation, December 2002. http://purl.oclc.org/DLF/benchrepro0212
Note digitized 2010 HathiTrust Digital Library committed to preserve pda
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Inc. 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Incorporated 2001
Copyright O'Reilly Media, Inc. 2001
ISBN 9780596516277 (electronic bk.)
0596516274 (electronic bk.)
9780596550479 (electronic bk.)
0596550472 (electronic bk.)
0596000804
9780596000806
ISBN/ISSN 0596000804
OCLC # 54115761
Additional Format Print version: Tisdall, James D. Beginning Perl for bioinformatics. 1st ed. Beijing ; Sebastopol, CA : O'Reilly, 2001 0596000804 (DLC) 2002277715 (OCoLC)49583667.


If you experience difficulty accessing or navigating this content, please contact the OPAL Support Team